There are some fixes regarding incorrect network delay measures in latest 96x1 h.323 fw: 6.6 which can be download from here:
https://support.avaya.com/downloads/download-details.action?contentId=C20154101513453530_2&productId=P0553&releaseId=H.323%206.6.x
As per release notes:
https://downloads.avaya.com/css/P8/documents/101009359
H.323 6.6.0 Resolved Issues
ID Issue Description
10802 RTCP packets are not sent occasionally for shuffled calls and causes to the statistics (including round trip delay) to be sent with a zero value (SR: 1-5055274022)
Note: there is also an unresolved one so check if E129 is involved in the problematic call scenario:
H.323 6.6.0 unresolved issues:
ID Issue Description
11041 Network delay values are high when a call is created between deskphone and E129 endpoints.
https://downloads.avaya.com/css/P8/documents/101018219 (Page 13)
fix for the issue “Item 795 - RTCP DLSR field is showing delay though there is no such delay “ has been planned to deliver it in the service pack 3 targeted for release in September'16.
Note : Currently it is numbered SP3 but this is a tentative number/name and it might change.